Training

bannerWelcome to our tutorials and training!

Each tutorial listed below is designed to be a self contained learning experience. We endeavour to provide tutorials that are free from bugs/glitches and errors, to this end we test and verify to the best of our ability. However it is inevitable that some problems escape unnoticed, should you encounter a problem, regardless of how trivial please report it to This email address is being protected from spambots. You need JavaScript enabled to view it..

Clicking the link at the end of each description will start the JupyterHub for that tutorial.

To help us measure the impact of our training, users should include the following statement in the acknowledgements: "This work has benefited from the training provided by the UK Collaborative Computational Project in Biomolecular Simulation, CCPBioSim (http://www.ccpbiosim.ac.uk/), supported by EPSRC (grant no. EP/M022609/1)" Thank you!

 

 

icon chemshell biosimulation

Basic MD Data Analysis with MDTraj

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Basic MD Statistical Analysis

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Introduction to PCA Analysis

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Introduction to PROPKA

icon chemshell biosimulation

Analysis of Ubiquitin

AMBER MD logo

Introduction to Amber MD

interactions

Introduction to FESetup

Longbow logo

Introduction to Longbow: a job submission tool

ISAMBARD logo

Introduction to ISAMBARD

FE Analysis

Introduction to Free Energy Analysis

qmmm

Introduction to QM/MM Modelling of Enzyme Reactions

Markov logo

Introduction to Markov State Modelling

Python logo

Introduction to Python for Biomolecular modelling

Python logo

Introduction to BioSimSpace

Python logo

Introduction to ProtoMS

Training

bannerWelcome to our tutorials and training!

CCPBioSim is constantly developing tutorials and training material, covering both basic concepts and advanced biomolecular simulation methods. Most are now available to members at any time through our cloud-based training platform, which means they can be run from a web browser directly, without the need to download or install anything on your own computer.

Not yet a member? Register using the "Log in" button (top right)!

Registration is required to access the training modules. Please log in using the "Log in" button at the top right of this page and click register if you are a first time user. Do NOT use a password you use for other sites. Please use a professional email address rather than a personal one if possible. If you have any questions or trouble registering please contact This email address is being protected from spambots. You need JavaScript enabled to view it.. Our privacy policy is here.

The following modules are available when you are logged in:

 

icon chemshell biosimulation

Basic MD Data Analysis with MDTraj

icon chemshell biosimulation

Basic MD Statistical Analysis

icon chemshell biosimulation

Introduction to PCA Analysis

icon chemshell biosimulation

Introduction to PROPKA

icon chemshell biosimulation

Analysis of Ubiquitin

AMBER MD logo

Introduction to Amber MD

interactions

Introduction to FESetup

Longbow logo

Introduction to Longbow: a job submission tool

ISAMBARD logo

Introduction to ISAMBARD

FE Analysis

Introduction to Free Energy Analysis

qmmm

Introduction to QM/MM Modelling of Enzyme Reactions

Markov logo

Introduction to Markov State Modelling

Python logo

Introduction to Python for Biomolecular modelling

Python logo

Introduction to BioSimSpace

Python logo

Introduction to ProtoMS